HL_8CGN_066

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGN_066 not in the Motif Atlas

Geometric match to HL_4V9F_066

Geometric discrepancy: 0.0692

The information below is about HL_4V9F_066

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8CGN|1|AA|C|3025
8CGN|1|AA|G|3026
8CGN|1|AA|A|3027
8CGN|1|AA|G|3028
8CGN|1|AA|A|3029
8CGN|1|AA|G|3030

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain LL

RPL9A isoform 1

Chain Y

Ubiquitin-60S ribosomal protein L40