HL_8CGN_068

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8CGN|1|AA|G|3116, 8CGN|1|AA|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGN_068 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0572

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8CGN|1|AA|C|3110
8CGN|1|AA|U|3111
8CGN|1|AA|G|3112
8CGN|1|AA|A|3113
8CGN|1|AA|A|3114
8CGN|1|AA|C|3115
8CGN|1|AA|G|3116
8CGN|1|AA|C|3117
8CGN|1|AA|C|3118
8CGN|1|AA|U|3119
8CGN|1|AA|C|3120
8CGN|1|AA|U|3121
8CGN|1|AA|A|3122
8CGN|1|AA|A|3123
8CGN|1|AA|G|3124

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L16-A

Chain LL

RPL9A isoform 1

Chain Y

Ubiquitin-60S ribosomal protein L40