HL_8CGN_080

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGN_080 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.151

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8CGN|1|CC|G|124
8CGN|1|CC|U|125
8CGN|1|CC|A|126
8CGN|1|CC|U|127
8CGN|1|CC|U|128
8CGN|1|CC|C|129

Current chains

Chain CC

5.8S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA