HL_8CGN_082
3D structure
- PDB id
- 8CGN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Non-rotated 80S S. cerevisiae ribosome with ligands
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.28 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CGN_082 not in the Motif Atlas
- Homologous match to HL_6UFG_007
- Geometric discrepancy: 0.2794
- The information below is about HL_6UFG_007
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
8CGN|1|Cc|G|32
8CGN|1|Cc|C|33
8CGN|1|Cc|U|34
8CGN|1|Cc|C|35
8CGN|1|Cc|A|36
8CGN|1|Cc|U|37
8CGN|1|Cc|A|38
8CGN|1|Cc|A|39
8CGN|1|Cc|C|40
Current chains
- Chain Cc
- Transfer RNA fMet
Nearby chains
- Chain 4
- 40S ribosomal protein S28-A
- Chain Bb
- Transfer RNA; tRNA
- Chain Dd
- Messenger RNA
- Chain c
- Small subunit ribosomal RNA; SSU rRNA
- Chain i
- 40S ribosomal protein S5
- Chain q
- 40S ribosomal protein S14-A
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