HL_8CGN_095

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGN_095 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1147

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8CGN|1|c|A|520
8CGN|1|c|A|521
8CGN|1|c|U|522
8CGN|1|c|G|523
8CGN|1|c|U|524
8CGN|1|c|A|525
8CGN|1|c|A|526
8CGN|1|c|A|527
8CGN|1|c|U|528
8CGN|1|c|A|529
8CGN|1|c|C|530
8CGN|1|c|C|531
8CGN|1|c|U|532

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S24-A

Chain m

40S ribosomal protein S9-A