HL_8CGN_097

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

8CGN|1|c|G|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGN_097 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.1046

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8CGN|1|c|U|764
8CGN|1|c|G|765
8CGN|1|c|U|766
8CGN|1|c|U|767
8CGN|1|c|C|768
8CGN|1|c|A|769
8CGN|1|c|A|770
8CGN|1|c|A|771
8CGN|1|c|G|772

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S24-A

Chain h

40S ribosomal protein S4-A

Chain m

40S ribosomal protein S9-A