HL_8CGN_098

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

8CGN|1|c|A|780, 8CGN|1|c|U|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGN_098 not in the Motif Atlas

Homologous match to HL_8P9A_207

Geometric discrepancy: 0.4959

The information below is about HL_8P9A_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

8CGN|1|c|C|777
8CGN|1|c|G|778
8CGN|1|c|U|779
8CGN|1|c|A|780
8CGN|1|c|U|781
8CGN|1|c|U|782
8CGN|1|c|G|783

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S24-A