HL_8CGN_115

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

GCCUCGGU

Length

8 nucleotides

Bulged bases

8CGN|1|AA|U|545, 8CGN|1|AA|C|546

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGN_115 not in the Motif Atlas

Homologous match to HL_8P9A_124

Geometric discrepancy: 0.4174

The information below is about HL_8P9A_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CGN|1|AA|G|542
8CGN|1|AA|C|543
8CGN|1|AA|C|544
8CGN|1|AA|U|545
8CGN|1|AA|C|546
8CGN|1|AA|G|547
8CGN|1|AA|G|548
8CGN|1|AA|U|549

Current chains

Chain AA

25S ribosomal RNA

Nearby chains