3D structure

PDB id
8CGR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Apramycin bound to the 30S body
Experimental method
ELECTRON MICROSCOPY
Resolution
2.12 Å

Loop

Sequence
GGGCC
Length
5 nucleotides
Bulged bases
None detected
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CGR_005 not in the Motif Atlas
Geometric match to HL_5XUZ_001
Geometric discrepancy: 0.1243
The information below is about HL_5XUZ_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_69752.2
Basepair signature
cWW-F
Number of instances in this motif group
7

Unit IDs

8CGR|1|A|G|202
8CGR|1|A|G|203
8CGR|1|A|G|204
8CGR|1|A|C|214
8CGR|1|A|C|215

Current chains

Chain A
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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