HL_8CGR_011

3D structure

PDB id

8CGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Apramycin bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.12 Å

Loop

Sequence

CCUUCGG

Length

7 nucleotides

Bulged bases

8CGR|1|A|U|420, 8CGR|1|A|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGR_011 not in the Motif Atlas

Homologous match to HL_4LFB_011

Geometric discrepancy: 0.1109

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8CGR|1|A|C|418
8CGR|1|A|C|419
8CGR|1|A|U|420
8CGR|1|A|U|421
8CGR|1|A|C|422
8CGR|1|A|G|423
8CGR|1|A|G|424

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4