3D structure

PDB id
8CGR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Apramycin bound to the 30S body
Experimental method
ELECTRON MICROSCOPY
Resolution
2.12 Å

Loop

Sequence
GUUAAUACC
Length
9 nucleotides
Bulged bases
8CGR|1|A|U|467
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CGR_012 not in the Motif Atlas
Homologous match to HL_5J7L_012
Geometric discrepancy: 0.1815
The information below is about HL_5J7L_012
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_81538.2
Basepair signature
cWW-tSH-F-F-F-F
Number of instances in this motif group
16

Unit IDs

8CGR|1|A|G|462
8CGR|1|A|U|463
8CGR|1|A|U|464
8CGR|1|A|A|465
8CGR|1|A|A|466
8CGR|1|A|U|467
8CGR|1|A|A|468
8CGR|1|A|C|469
8CGR|1|A|C|470

Current chains

Chain A
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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