3D structure

PDB id
8CGR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Apramycin bound to the 30S body
Experimental method
ELECTRON MICROSCOPY
Resolution
2.12 Å

Loop

Sequence
CUUCGG
Length
6 nucleotides
Bulged bases
8CGR|1|A|U|1451
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CGR_022 not in the Motif Atlas
Homologous match to HL_4LFB_031
Geometric discrepancy: 0.1473
The information below is about HL_4LFB_031
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.5
Basepair signature
cWW-tSW-F
Number of instances in this motif group
57

Unit IDs

8CGR|1|A|C|1449
8CGR|1|A|U|1450
8CGR|1|A|U|1451
8CGR|1|A|C|1452
8CGR|1|A|G|1453
8CGR|1|A|G|1454

Current chains

Chain A
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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