HL_8CGU_009

3D structure

PDB id

8CGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gentamicin bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

1.89 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

8CGU|1|A|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGU_009 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.0777

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

8CGU|1|A|C|342
8CGU|1|A|U|343
8CGU|1|A|A|344
8CGU|1|A|C|345
8CGU|1|A|G|346
8CGU|1|A|G|347

Current chains

Chain A

16S rRNA

Nearby chains