HL_8CGU_011

3D structure

PDB id

8CGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gentamicin bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

1.89 Å

Loop

Sequence

CCUUCGG

Length

7 nucleotides

Bulged bases

8CGU|1|A|U|420, 8CGU|1|A|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGU_011 not in the Motif Atlas

Homologous match to HL_4LFB_011

Geometric discrepancy: 0.1195

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8CGU|1|A|C|418
8CGU|1|A|C|419
8CGU|1|A|U|420
8CGU|1|A|U|421
8CGU|1|A|C|422
8CGU|1|A|G|423
8CGU|1|A|G|424

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4