HL_8CGU_012

3D structure

PDB id

8CGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gentamicin bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

1.89 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8CGU|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGU_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.18

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8CGU|1|A|G|462
8CGU|1|A|U|463
8CGU|1|A|U|464
8CGU|1|A|A|465
8CGU|1|A|A|466
8CGU|1|A|U|467
8CGU|1|A|A|468
8CGU|1|A|C|469
8CGU|1|A|C|470

Current chains

Chain A

16S rRNA

Nearby chains