3D structure

PDB id
8CGU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Gentamicin bound to the 30S body
Experimental method
ELECTRON MICROSCOPY
Resolution
1.89 Å

Loop

Sequence
GCAGCC(G7M)C
Length
8 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CGU_013 not in the Motif Atlas
Geometric match to HL_1WZ2_007
Geometric discrepancy: 0.2276
The information below is about HL_1WZ2_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.5
Basepair signature
cWW-F
Number of instances in this motif group
19

Unit IDs

8CGU|1|A|G|521
8CGU|1|A|C|522
8CGU|1|A|A|523
8CGU|1|A|G|524
8CGU|1|A|C|525
8CGU|1|A|C|526
8CGU|1|A|G7M|527
8CGU|1|A|C|528

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
Small ribosomal subunit protein uS12

Coloring options:


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