HL_8CGV_006

3D structure

PDB id

8CGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tiamulin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.66 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8CGV|1|a|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGV_006 not in the Motif Atlas

Homologous match to HL_5J7L_139

Geometric discrepancy: 0.0491

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8CGV|1|a|G|194
8CGV|1|a|A|195
8CGV|1|a|A|196
8CGV|1|a|A|197
8CGV|1|a|C|198
8CGV|1|a|A|199
8CGV|1|a|U|200
8CGV|1|a|C|201

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L15

Chain w

Large ribosomal subunit protein bL28