3D structure

PDB id
8CGV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tiamulin bound to the 50S subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.66 Å

Loop

Sequence
GAAACAUC
Length
8 nucleotides
Bulged bases
8CGV|1|a|A|196
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CGV_006 not in the Motif Atlas
Homologous match to HL_5J7L_139
Geometric discrepancy: 0.0491
The information below is about HL_5J7L_139
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_30068.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
15

Unit IDs

8CGV|1|a|G|194
8CGV|1|a|A|195
8CGV|1|a|A|196
8CGV|1|a|A|197
8CGV|1|a|C|198
8CGV|1|a|A|199
8CGV|1|a|U|200
8CGV|1|a|C|201

Current chains

Chain a
23S rRNA

Nearby chains

Chain k
50S ribosomal protein L15
Chain w
Large ribosomal subunit protein bL28

Coloring options:


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