HL_8CGV_013

3D structure

PDB id

8CGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tiamulin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.66 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8CGV|1|a|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGV_013 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0457

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8CGV|1|a|G|410
8CGV|1|a|G|411
8CGV|1|a|A|412
8CGV|1|a|C|413
8CGV|1|a|C|414
8CGV|1|a|A|415
8CGV|1|a|U|416
8CGV|1|a|C|417

Current chains

Chain a

23S rRNA

Nearby chains