HL_8CGV_032

3D structure

PDB id

8CGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tiamulin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.66 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

8CGV|1|a|U|1396, 8CGV|1|a|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGV_032 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.0607

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8CGV|1|a|G|1389
8CGV|1|a|U|1390
8CGV|1|a|U|1391
8CGV|1|a|A|1392
8CGV|1|a|A|1393
8CGV|1|a|U|1394
8CGV|1|a|A|1395
8CGV|1|a|U|1396
8CGV|1|a|U|1397
8CGV|1|a|C|1398

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23