HL_8CH6_002
3D structure
- PDB id
- 8CH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a late-stage activated spliceosome (BAqr) arrested with a dominant-negative Aquarius mutant (state B complex).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.9 Å
Loop
- Sequence
- UGCGCAA
- Length
- 7 nucleotides
- Bulged bases
- 8CH6|1|d|C|68
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CH6_002 not in the Motif Atlas
- Homologous match to HL_5VSU_001
- Geometric discrepancy: 0.581
- The information below is about HL_5VSU_001
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_34789.4
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 399
Unit IDs
8CH6|1|d|U|64
8CH6|1|d|G|65
8CH6|1|d|C|66
8CH6|1|d|G|67
8CH6|1|d|C|68
8CH6|1|d|A|69
8CH6|1|d|A|70
Current chains
- Chain d
- RNU6-1
Nearby chains
- Chain I
- Splicing factor 3A subunit 2
- Chain O
- Pleiotropic regulator 1
- Chain Q
- Spliceosome-associated protein CWC15 homolog
- Chain Y
- SNW domain-containing protein 1
- Chain a
- Pre-mRNA-processing-splicing factor 8
- Chain e
- U5 spliceosomal RNA; U5 snRNA
- Chain g
- MINX-M3
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