HL_8CH6_003
3D structure
- PDB id
- 8CH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a late-stage activated spliceosome (BAqr) arrested with a dominant-negative Aquarius mutant (state B complex).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.9 Å
Loop
- Sequence
- UCGCCUUUUACUA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CH6|1|e|U|35
8CH6|1|e|C|36
8CH6|1|e|G|37
8CH6|1|e|C|38
8CH6|1|e|C|39
8CH6|1|e|U|40
8CH6|1|e|U|41
8CH6|1|e|U|42
8CH6|1|e|U|43
8CH6|1|e|A|44
8CH6|1|e|C|45
8CH6|1|e|U|46
8CH6|1|e|A|47
Current chains
- Chain e
- RNU5A-1
Nearby chains
- Chain I
- Splicing factor 3A subunit 2
- Chain Q
- Spliceosome-associated protein CWC15 homolog
- Chain a
- Pre-mRNA-processing-splicing factor 8
- Chain d
- U6 spliceosomal RNA; U6 snRNA
- Chain g
- MINX-M3
- Chain q
- Serine/arginine repetitive matrix protein 2
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