HL_8CH6_004

3D structure

PDB id

8CH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a late-stage activated spliceosome (BAqr) arrested with a dominant-negative Aquarius mutant (state B complex).

Experimental method

ELECTRON MICROSCOPY

Resolution

5.9 Å

Loop

Sequence

CUUGCUUUGGCAAG

Length

14 nucleotides

Bulged bases

8CH6|1|e|U|106

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CH6|1|e|C|100
8CH6|1|e|U|101
8CH6|1|e|U|102
8CH6|1|e|G|103
8CH6|1|e|C|104
8CH6|1|e|U|105
8CH6|1|e|U|106
8CH6|1|e|U|107
8CH6|1|e|G|108
8CH6|1|e|G|109
8CH6|1|e|C|110
8CH6|1|e|A|111
8CH6|1|e|A|112
8CH6|1|e|G|113

Current chains

Chain e

RNU5A-1

Nearby chains

Chain h

Small nuclear ribonucleoprotein F

Chain k

Small nuclear ribonucleoprotein Sm D1

Chain l

Small nuclear ribonucleoprotein Sm D2