HL_8CH6_007

3D structure

PDB id

8CH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a late-stage activated spliceosome (BAqr) arrested with a dominant-negative Aquarius mutant (state B complex).

Experimental method

ELECTRON MICROSCOPY

Resolution

5.9 Å

Loop

Sequence

GUAUUGCAGUACCUC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CH6|1|f|G|158
8CH6|1|f|U|159
8CH6|1|f|A|160
8CH6|1|f|U|161
8CH6|1|f|U|162
8CH6|1|f|G|163
8CH6|1|f|C|164
8CH6|1|f|A|165
8CH6|1|f|G|166
8CH6|1|f|U|167
8CH6|1|f|A|168
8CH6|1|f|C|169
8CH6|1|f|C|170
8CH6|1|f|U|171
8CH6|1|f|C|172

Current chains

Chain f

RNU2-1

Nearby chains

Chain 9

Small nuclear ribonucleoprotein G

Chain s

U2 small nuclear ribonucleoprotein B''