HL_8CRE_044

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCUAAUUAAAA

Length

11 nucleotides

Bulged bases

8CRE|1|1|A|2116, 8CRE|1|1|A|2117, 8CRE|1|1|U|2118, 8CRE|1|1|A|2122

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8CRE|1|1|U|2113
8CRE|1|1|C|2114
8CRE|1|1|U|2115
8CRE|1|1|A|2116
8CRE|1|1|A|2117
8CRE|1|1|U|2118
8CRE|1|1|U|2119
8CRE|1|1|A|2120
8CRE|1|1|A|2121
8CRE|1|1|A|2122
8CRE|1|1|A|2123

Current chains

Chain 1

25S

Nearby chains

Chain AK

60S ribosomal protein L37-B

Chain j

60S ribosomal protein L2-B