HL_8CRE_080

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CRE_080 not in the Motif Atlas

Homologous match to HL_8C3A_003

Geometric discrepancy: 0.0489

The information below is about HL_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

8CRE|1|AS|C|89
8CRE|1|AS|G|90
8CRE|1|AS|G|91
8CRE|1|AS|C|92
8CRE|1|AS|G|93
8CRE|1|AS|A|94
8CRE|1|AS|G|95

Current chains

Chain AS

25S

Nearby chains

Chain BG

60S ribosomal protein L13

Chain BL

60S ribosomal protein L18-A

Chain BV

60S ribosomal protein L28

Chain CJ

60S ribosomal protein L42-B