HL_8CRE_093

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CRE_093 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.0533

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8CRE|1|AS|U|705
8CRE|1|AS|G|706
8CRE|1|AS|A|707
8CRE|1|AS|A|708
8CRE|1|AS|A|709
8CRE|1|AS|G|710

Current chains

Chain AS

25S

Nearby chains

Chain BG

60S ribosomal protein L13

Chain BL

60S ribosomal protein L18-A

Chain BV

60S ribosomal protein L28

Chain CD

60S ribosomal protein L36