HL_8CRE_108

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CRE_108 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.0561

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8CRE|1|AS|A|1458
8CRE|1|AS|U|1459
8CRE|1|AS|G|1460
8CRE|1|AS|A|1461
8CRE|1|AS|G|1462
8CRE|1|AS|A|1463
8CRE|1|AS|A|1464
8CRE|1|AS|C|1465
8CRE|1|AS|U|1466

Current chains

Chain AS

25S

Nearby chains

Chain BM

60S ribosomal protein L19-A

Chain BY

60S ribosomal protein L31-B