HL_8CRE_110

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAGCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CRE_110 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.0449

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8CRE|1|AS|G|1540
8CRE|1|AS|A|1541
8CRE|1|AS|A|1542
8CRE|1|AS|G|1543
8CRE|1|AS|C|1544
8CRE|1|AS|U|1545

Current chains

Chain AS

25S

Nearby chains

Chain BI

60S ribosomal protein L15-A

Chain CE

60S ribosomal protein L37-B