HL_8CRE_117

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCUUG

Length

5 nucleotides

Bulged bases

8CRE|1|AS|C|1789, 8CRE|1|AS|U|1790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CRE_117 not in the Motif Atlas

Homologous match to HL_8C3A_040

Geometric discrepancy: 0.0447

The information below is about HL_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

8CRE|1|AS|C|1788
8CRE|1|AS|C|1789
8CRE|1|AS|U|1790
8CRE|1|AS|U|1791
8CRE|1|AS|G|1792

Current chains

Chain AS

25S

Nearby chains

Chain AW

60S ribosomal protein L2-B

Chain CK

60S ribosomal protein L43-A