HL_8CRE_133

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CRE_133 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.0635

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8CRE|1|AS|A|2645
8CRE|1|AS|A|2646
8CRE|1|AS|C|2647
8CRE|1|AS|A|2648
8CRE|1|AS|G|2649
8CRE|1|AS|A|2650
8CRE|1|AS|A|2651
8CRE|1|AS|A|2652
8CRE|1|AS|U|2653

Current chains

Chain AS

25S

Nearby chains

Chain BF

60S ribosomal protein L11-B

Chain CL

60S ribosomal protein CAALFM_C304810CA