HL_8CRE_142

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CRE_142 not in the Motif Atlas

Homologous match to HL_8C3A_066

Geometric discrepancy: 0.0738

The information below is about HL_8C3A_066

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8CRE|1|AS|C|2997
8CRE|1|AS|G|2998
8CRE|1|AS|A|2999
8CRE|1|AS|G|3000
8CRE|1|AS|A|3001
8CRE|1|AS|G|3002

Current chains

Chain AS

25S

Nearby chains

Chain BD

60S ribosomal protein L9-B

Chain CH

60S ribosomal protein L40-B