HL_8CRE_226

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCUUCUGC

Length

8 nucleotides

Bulged bases

8CRE|1|AS|U|542, 8CRE|1|AS|U|544, 8CRE|1|AS|G|545

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CRE_226 not in the Motif Atlas

Homologous match to HL_8CRE_012

Geometric discrepancy: 0.4695

The information below is about HL_8CRE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

8CRE|1|AS|G|539
8CRE|1|AS|C|540
8CRE|1|AS|U|541
8CRE|1|AS|U|542
8CRE|1|AS|C|543
8CRE|1|AS|U|544
8CRE|1|AS|G|545
8CRE|1|AS|C|546

Current chains

Chain AS

25S

Nearby chains

Chain BH

60S ribosomal protein L14-B

Chain BN

60S ribosomal protein L20