HL_8CSQ_001

3D structure

PDB id

8CSQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UUUGGUCCUAG

Length

11 nucleotides

Bulged bases

8CSQ|1|A|U|656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CSQ_001 not in the Motif Atlas

Homologous match to HL_4LFB_001

Geometric discrepancy: 0.1494

The information below is about HL_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.1

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8CSQ|1|A|U|654
8CSQ|1|A|U|655
8CSQ|1|A|U|656
8CSQ|1|A|G|657
8CSQ|1|A|G|658
8CSQ|1|A|U|659
8CSQ|1|A|C|660
8CSQ|1|A|C|661
8CSQ|1|A|U|662
8CSQ|1|A|A|663
8CSQ|1|A|G|664

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain D

28S ribosomal protein S5, mitochondrial