HL_8CSS_007
3D structure
- PDB id
- 8CSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial small subunit assembly intermediate (State D)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.36 Å
Loop
- Sequence
- CGAAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CSS_007 not in the Motif Atlas
- Homologous match to HL_4LFB_010
- Geometric discrepancy: 0.1923
- The information below is about HL_4LFB_010
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.4
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 399
Unit IDs
8CSS|1|A|C|842
8CSS|1|A|G|843
8CSS|1|A|A|844
8CSS|1|A|A|845
8CSS|1|A|A|846
8CSS|1|A|G|847
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain 0
- 28S ribosomal protein S34, mitochondrial
- Chain M
- 28S ribosomal protein S16, mitochondrial
- Chain O
- 28S ribosomal protein S18b, mitochondrial
- Chain U
- 28S ribosomal protein S26, mitochondrial
Coloring options: