HL_8CST_003

3D structure

PDB id

8CST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CACCACG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CST_003 not in the Motif Atlas

Geometric match to HL_3NKB_002

Geometric discrepancy: 0.2834

The information below is about HL_3NKB_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

8CST|1|A|C|734
8CST|1|A|A|735
8CST|1|A|C|736
8CST|1|A|C|737
8CST|1|A|A|738
8CST|1|A|C|739
8CST|1|A|G|740

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 0

28S ribosomal protein S34, mitochondrial

Chain M

28S ribosomal protein S16, mitochondrial

Chain U

28S ribosomal protein S26, mitochondrial