HL_8CST_014

3D structure

PDB id

8CST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GAUAAACCCC

Length

10 nucleotides

Bulged bases

8CST|1|A|U|1219, 8CST|1|A|C|1223, 8CST|1|A|C|1225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CST_014 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.273

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.10

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8CST|1|A|G|1217
8CST|1|A|A|1218
8CST|1|A|U|1219
8CST|1|A|A|1220
8CST|1|A|A|1221
8CST|1|A|A|1222
8CST|1|A|C|1223
8CST|1|A|C|1224
8CST|1|A|C|1225
8CST|1|A|C|1226

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 7

Methyltransferase-like protein 17, mitochondrial