HL_8CSU_016

3D structure

PDB id

8CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State C*)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

UACCCCA

Length

7 nucleotides

Bulged bases

8CSU|1|A|C|1377, 8CSU|1|A|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CSU_016 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1757

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

8CSU|1|A|U|1373
8CSU|1|A|A|1374
8CSU|1|A|C|1375
8CSU|1|A|C|1376
8CSU|1|A|C|1377
8CSU|1|A|C|1378
8CSU|1|A|A|1379

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain F

28S ribosomal protein S7, mitochondrial

Chain G

28S ribosomal protein S9, mitochondrial

Chain X

28S ribosomal protein S29, mitochondrial