HL_8CSU_020

3D structure

PDB id

8CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State C*)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

UGGAAA

Length

6 nucleotides

Bulged bases

8CSU|1|A|G|1581, 8CSU|1|A|G|1582, 8CSU|1|A|A|1584

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CSU_020 not in the Motif Atlas

Homologous match to HL_4LFB_032

Geometric discrepancy: 0.5076

The information below is about HL_4LFB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8CSU|1|A|U|1580
8CSU|1|A|G|1581
8CSU|1|A|G|1582
8CSU|1|A|A|1583
8CSU|1|A|A|1584
8CSU|1|A|A|1585

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 5

Dimethyladenosine transferase 1, mitochondrial