HL_8CVJ_028

3D structure

PDB id

8CVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GUGGCUUAGAAGCAGCCAUC

Length

20 nucleotides

Bulged bases

8CVJ|1|1A|A|1067, 8CVJ|1|1A|G|1068, 8CVJ|1|1A|A|1070

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CVJ|1|1A|G|1059
8CVJ|1|1A|U|1060
8CVJ|1|1A|G|1062
8CVJ|1|1A|G|1063
8CVJ|1|1A|C|1064
8CVJ|1|1A|U|1065
8CVJ|1|1A|U|1066
8CVJ|1|1A|A|1067
8CVJ|1|1A|G|1068
8CVJ|1|1A|A|1069
8CVJ|1|1A|A|1070
8CVJ|1|1A|G|1071
8CVJ|1|1A|C|1072
8CVJ|1|1A|A|1073
8CVJ|1|1A|G|1074
8CVJ|1|1A|C|1075
8CVJ|1|1A|C|1076
8CVJ|1|1A|A|1077
8CVJ|1|1A|U|1078
8CVJ|1|1A|C|1079

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains