HL_8CVJ_050

3D structure

PDB id

8CVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVJ_050 not in the Motif Atlas

Geometric match to HL_6DME_002

Geometric discrepancy: 0.3152

The information below is about HL_6DME_002

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

8CVJ|1|1A|C|2143
8CVJ|1|1A|U|2144
8CVJ|1|1A|C|2145
8CVJ|1|1A|C|2146
8CVJ|1|1A|G|2147
8CVJ|1|1A|G|2148

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains