HL_8CVJ_068

3D structure

PDB id

8CVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVJ_068 not in the Motif Atlas

Geometric match to HL_4V9F_065

Geometric discrepancy: 0.0683

The information below is about HL_4V9F_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8CVJ|1|1A|C|2856
8CVJ|1|1A|G|2857
8CVJ|1|1A|C|2858
8CVJ|1|1A|G|2859
8CVJ|1|1A|A|2860
8CVJ|1|1A|G|2861

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains