HL_8CVJ_222

3D structure

PDB id

8CVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

G(5MU)(PSU)CGAUUC

Length

9 nucleotides

Bulged bases

8CVJ|1|2y|C|56, 8CVJ|1|2y|G|57

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVJ_222 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2066

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8CVJ|1|2y|G|53
8CVJ|1|2y|5MU|54
8CVJ|1|2y|PSU|55
8CVJ|1|2y|C|56
8CVJ|1|2y|G|57
8CVJ|1|2y|A|58
8CVJ|1|2y|U|59
8CVJ|1|2y|U|60
8CVJ|1|2y|C|61

Current chains

Chain 2y

E-site Deacylated tRNAphe

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA