3D structure

PDB id
8CVK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
GGGAAC
Length
6 nucleotides
Bulged bases
8CVK|1|1A|G|125
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CVK_003 not in the Motif Atlas
Geometric match to HL_7RQB_003
Geometric discrepancy: 0.0611
The information below is about HL_7RQB_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_70546.1
Basepair signature
cWW-F
Number of instances in this motif group
18

Unit IDs

8CVK|1|1A|G|123
8CVK|1|1A|G|124
8CVK|1|1A|G|125
8CVK|1|1A|A|126
8CVK|1|1A|A|127
8CVK|1|1A|C|128

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 17
50S ribosomal protein L34
Chain 1X
50S ribosomal protein L23

Coloring options:


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