HL_8CVK_028
3D structure
- PDB id
- 8CVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- CUUAGAAGCAG
- Length
- 11 nucleotides
- Bulged bases
- 8CVK|1|1A|A|1067, 8CVK|1|1A|G|1068, 8CVK|1|1A|A|1070
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CVK_028 not in the Motif Atlas
- Geometric match to HL_5J7L_161
- Geometric discrepancy: 0.398
- The information below is about HL_5J7L_161
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19210.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8CVK|1|1A|C|1064
8CVK|1|1A|U|1065
8CVK|1|1A|U|1066
8CVK|1|1A|A|1067
8CVK|1|1A|G|1068
8CVK|1|1A|A|1069
8CVK|1|1A|A|1070
8CVK|1|1A|G|1071
8CVK|1|1A|C|1072
8CVK|1|1A|A|1073
8CVK|1|1A|G|1074
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: