3D structure

PDB id
8CVK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
CUUAGAAGCAG
Length
11 nucleotides
Bulged bases
8CVK|1|1A|A|1067, 8CVK|1|1A|G|1068, 8CVK|1|1A|A|1070
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CVK_028 not in the Motif Atlas
Geometric match to HL_5J7L_161
Geometric discrepancy: 0.398
The information below is about HL_5J7L_161
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_19210.3
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

8CVK|1|1A|C|1064
8CVK|1|1A|U|1065
8CVK|1|1A|U|1066
8CVK|1|1A|A|1067
8CVK|1|1A|G|1068
8CVK|1|1A|A|1069
8CVK|1|1A|A|1070
8CVK|1|1A|G|1071
8CVK|1|1A|C|1072
8CVK|1|1A|A|1073
8CVK|1|1A|G|1074

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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