HL_8CVK_028

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

8CVK|1|1A|A|1067, 8CVK|1|1A|G|1068, 8CVK|1|1A|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVK_028 not in the Motif Atlas

Geometric match to HL_5J7L_161

Geometric discrepancy: 0.398

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8CVK|1|1A|C|1064
8CVK|1|1A|U|1065
8CVK|1|1A|U|1066
8CVK|1|1A|A|1067
8CVK|1|1A|G|1068
8CVK|1|1A|A|1069
8CVK|1|1A|A|1070
8CVK|1|1A|G|1071
8CVK|1|1A|C|1072
8CVK|1|1A|A|1073
8CVK|1|1A|G|1074

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains