HL_8CVK_093
3D structure
- PDB id
- 8CVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- CCGCGAGG
- Length
- 8 nucleotides
- Bulged bases
- 8CVK|1|1a|C|1030|||B, 8CVK|1|1a|G|1030|||C, 8CVK|1|1a|A|1030|||D
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CVK_093 not in the Motif Atlas
- Homologous match to HL_6CZR_094
- Geometric discrepancy: 0.5609
- The information below is about HL_6CZR_094
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CVK|1|1a|C|1029
8CVK|1|1a|C|1030
8CVK|1|1a|G|1030|||A
8CVK|1|1a|C|1030|||B
8CVK|1|1a|G|1030|||C
8CVK|1|1a|A|1030|||D
8CVK|1|1a|G|1031
8CVK|1|1a|G|1032
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: