3D structure

PDB id
8CVK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
CGUGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CVK_126 not in the Motif Atlas
Geometric match to HL_7RQB_015
Geometric discrepancy: 0.0508
The information below is about HL_7RQB_015
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_35490.2
Basepair signature
cWW-tSH-F-F
Number of instances in this motif group
299

Unit IDs

8CVK|1|2A|C|462
8CVK|1|2A|G|463
8CVK|1|2A|U|464
8CVK|1|2A|G|465
8CVK|1|2A|A|466
8CVK|1|2A|G|467

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 27
50S ribosomal protein L34
Chain 2F
50S ribosomal protein L4

Coloring options:


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