3D structure

PDB id
8CVK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
GCUAGGGGGCCCACCAGCCUACCAAAC
Length
27 nucleotides
Bulged bases
8CVK|1|2A|C|888, 8CVK|1|2A|A|896
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8CVK|1|2A|G|875
8CVK|1|2A|C|876
8CVK|1|2A|U|877
8CVK|1|2A|A|878
8CVK|1|2A|G|879
8CVK|1|2A|G|880
8CVK|1|2A|G|881
8CVK|1|2A|G|882
8CVK|1|2A|G|883
8CVK|1|2A|C|884
8CVK|1|2A|C|885
8CVK|1|2A|C|886
8CVK|1|2A|A|887
8CVK|1|2A|C|888
8CVK|1|2A|C|889
8CVK|1|2A|A|890
8CVK|1|2A|G|892
8CVK|1|2A|C|893
8CVK|1|2A|C|894
8CVK|1|2A|U|895
8CVK|1|2A|A|896
8CVK|1|2A|C|897
8CVK|1|2A|C|898
8CVK|1|2A|A|899
8CVK|1|2A|A|900
8CVK|1|2A|A|901
8CVK|1|2A|C|902

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2Q
50S ribosomal protein L16
Chain 2Z
50S ribosomal protein L25
Chain 2m
30S ribosomal protein S13
Chain 2w
Transfer RNA; tRNA

Coloring options:

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