HL_8CVK_138

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GCUAGGGGGCCCACCAGCCUACCAAAC

Length

27 nucleotides

Bulged bases

8CVK|1|2A|C|888, 8CVK|1|2A|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CVK|1|2A|G|875
8CVK|1|2A|C|876
8CVK|1|2A|U|877
8CVK|1|2A|A|878
8CVK|1|2A|G|879
8CVK|1|2A|G|880
8CVK|1|2A|G|881
8CVK|1|2A|G|882
8CVK|1|2A|G|883
8CVK|1|2A|C|884
8CVK|1|2A|C|885
8CVK|1|2A|C|886
8CVK|1|2A|A|887
8CVK|1|2A|C|888
8CVK|1|2A|C|889
8CVK|1|2A|A|890
8CVK|1|2A|G|892
8CVK|1|2A|C|893
8CVK|1|2A|C|894
8CVK|1|2A|U|895
8CVK|1|2A|A|896
8CVK|1|2A|C|897
8CVK|1|2A|C|898
8CVK|1|2A|A|899
8CVK|1|2A|A|900
8CVK|1|2A|A|901
8CVK|1|2A|C|902

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25

Chain 2m

30S ribosomal protein S13

Chain 2w

Transfer RNA; tRNA