HL_8CVK_146

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

8CVK|1|2A|U|1396, 8CVK|1|2A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVK_146 not in the Motif Atlas

Geometric match to HL_7RQB_036

Geometric discrepancy: 0.077

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8CVK|1|2A|G|1389
8CVK|1|2A|U|1390
8CVK|1|2A|U|1391
8CVK|1|2A|A|1392
8CVK|1|2A|A|1393
8CVK|1|2A|U|1394
8CVK|1|2A|A|1395
8CVK|1|2A|U|1396
8CVK|1|2A|U|1397
8CVK|1|2A|C|1398

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2X

50S ribosomal protein L23