HL_8CVK_146
3D structure
- PDB id
- 8CVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- GUUAAUAUUC
- Length
- 10 nucleotides
- Bulged bases
- 8CVK|1|2A|U|1396, 8CVK|1|2A|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CVK_146 not in the Motif Atlas
- Geometric match to HL_7RQB_036
- Geometric discrepancy: 0.077
- The information below is about HL_7RQB_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69023.2
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
8CVK|1|2A|G|1389
8CVK|1|2A|U|1390
8CVK|1|2A|U|1391
8CVK|1|2A|A|1392
8CVK|1|2A|A|1393
8CVK|1|2A|U|1394
8CVK|1|2A|A|1395
8CVK|1|2A|U|1396
8CVK|1|2A|U|1397
8CVK|1|2A|C|1398
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 2X
- 50S ribosomal protein L23
Coloring options: