3D structure

PDB id
8CVK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
CG(PSU)AAC(5MU)A(PSU)AA(OMC)G
Length
13 nucleotides
Bulged bases
8CVK|1|2A|A|1913, 8CVK|1|2A|C|1914, 8CVK|1|2A|A|1916
QA status
Modified nucleotides: PSU, 5MU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CVK_159 not in the Motif Atlas
Homologous match to HL_8VTW_047
Geometric discrepancy: 0.1053
The information below is about HL_8VTW_047
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8CVK|1|2A|C|1909
8CVK|1|2A|G|1910
8CVK|1|2A|PSU|1911
8CVK|1|2A|A|1912
8CVK|1|2A|A|1913
8CVK|1|2A|C|1914
8CVK|1|2A|5MU|1915
8CVK|1|2A|A|1916
8CVK|1|2A|PSU|1917
8CVK|1|2A|A|1918
8CVK|1|2A|A|1919
8CVK|1|2A|OMC|1920
8CVK|1|2A|G|1921

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2a
Small subunit ribosomal RNA; SSU rRNA
Chain 2v
MF-mRNA
Chain 2w
Transfer RNA; tRNA
Chain 2x
Transfer RNA; tRNA

Coloring options:


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