3D structure

PDB id
8CVK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
CGUCCACAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CVK_171 not in the Motif Atlas
Geometric match to HL_7RQB_060
Geometric discrepancy: 0.127
The information below is about HL_7RQB_060
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06192.2
Basepair signature
cWW-tSH-F-F
Number of instances in this motif group
14

Unit IDs

8CVK|1|2A|C|2471
8CVK|1|2A|G|2472
8CVK|1|2A|U|2473
8CVK|1|2A|C|2474
8CVK|1|2A|C|2475
8CVK|1|2A|A|2476
8CVK|1|2A|C|2477
8CVK|1|2A|A|2478
8CVK|1|2A|G|2479

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 29
50S ribosomal protein L36
Chain 2H
50S ribosomal protein L6
Chain 2Q
50S ribosomal protein L16
Chain 2w
Transfer RNA; tRNA

Coloring options:


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